Perl 

"Perl 5 is a highly capable, feature-rich programming language with over 25 years of development." [Perl Website 21 May 2013]

Available versions and module name

5.10.1 (perl-5.10.1 or perl)

5.10.0

(This version comes with the 
operating System, simply unload
the perl module to begin using
this version.)

Default version available

5.10.1

Website

http://www.perl.org

Python 2

Available versions and module name

2.7.3 (python-2.7.3 or python2 or python)

2.7.14 (python-2.7.14)

2.7.9 (python-2.7.9)

2.7.3 (python-2.7.3)

2.6.2 (python-2.6.2 or python)

anaconda 2.3.0 (anaconda-2.3.0)

anaconda 2.3.0 (built for qiime) (anaconda-2.3.0-qiime)

anaconda 2.3.0 (built for qiime2) (anaconda-2.3.0-qiime2)

anaconda 4.2.0 (anaconda-4.2.0)

anaconda 5.0.1 (anaconda-python2-5.0.1)

Default version available

2.7.3

Website

http://www.python.org/

Python 5

Available versions and module name

3.8.0 (python-3.8.0 or python3)

3.4.3 (python-2.7.14)

anaconda 5.0.1 (anaconda-5.0.1)

Default version available

3.8.0

Website

http://www.python.org/

If, for whatever reason, you would like to use the older versions of the compilers, or other available software, you can simply "unload" the current module and load the older version. See Software Module Information webpage.

Software list

  • AmpliconNoise
  • ARB
  • BLAST (Legacy BLAST- Not BLAST+)
  • BLAST+
  • Bowtie2
  • CD-HIT
  • cdbtools
  • ChimeraSlayer
  • clearcut
  • Cufflinks
  • Cytoscape
  • FastQC
  • FastTree
  • Fastx-Toolkit
  • Gepard
  • HMMER
  • IGV
  • infernal
  • Kraken
  • metavelvet
  • mothur
  • MUSCLE
  • Ngopt
  • ParsInsert
  • Pear
  • Pplacer
  • QIIME
  • RAxML
  • rRNASelector
  • RSEM
  • RTAX
  • SAM Tools
  • SAMStat
  • SourceTracker
  • TopHat
  • Trimmomatic
  • Trinityrnaseq
  • UCLUST
  • UProC
  • USEARCH
  • Velvet
  • Velvet Optmiser
  • Glasgow Haskell Compiler
  • GNU Bison
  • GNU Compiler
  • GNU Fortran Compiler
  • Go Compiler
  • Intel C and C++ Compiler
  • Intel Fortran Compiler
  • Mono C# Compiler and associated libraries
  • Apache Maven
  • GNU Emacs
  • IntelliJ IDEA
  • RStudio
  • Tex Live
  • Tex Info
  • ANSYS (Fluent and Mechanical)
  • ABAQUS
  • AVL Fire
  • Comsol Multiphysics
  • GDAL
  • GEOS
  • Panoply
  • Circos
  • ImageJ
  • ImageMagick
  • PLPlot
  • Xfig
  • Perl
  • Python (with many Modules Installed)
  • Mathematica
  • Grid Mathematica
  • Matlab
  • Matlab-Simulink
  • Octave
  • OpenBUGS
  • R
  • SPSS (by IBM)
  • Java
  • APSIM
  • Boost C++ Libraries
  • Expat XML Parser
  • FFTW
  • GMP (GNU Multiple Precision Arithmetic Library)
  • GNU Scientific Library (GSL)
  • HDF5
  • HDF-EOS5
  • Intel Math Kernel Libraries (Intel® MKL)
  • libbz2
  • libcurl
  • libjpeg
  • libpng
  • MPI
  • OpenBLAS
  • PCRE (Perl Compatible Regular Expressions)
  • szip
  • tcl
  • tk
  • UDUNITS