Apache Maven

Apache Maven is a software project management and comprehension tool. Based on the concept of a project object model (POM), Maven can manage a project's build, reporting and documentation from a central piece of information.. [Apache Maven Website - October 2017]

Available versions and module name

3.5.2 (apache-maven or apache-maven-3.5.2)

Default version available

3.5.2

 

Official Website

https://maven.apache.org/

GNU Emacs 

GNU Emacs is an extensible, customizable text editor - and more. [GNU Emacs Website - November 2012]

Available versions and module name

22.3.1

Default version available

 

Official Website

http://www.gnu.org/software/emacs/

IntelliJ IDEA 

IntelliJ IDEA is an Integrated Development Environment (IDE) for Java.

We have installed the Community Free version!

Available versions and module name

2017.2.5 (idea or idea-2017.2.5)

Default version available

2017.2.5

 

Official Website

https://www.jetbrains.com/idea/

RStudio

RStudio is an integrated development environment (IDE) for R. It includes a console, syntax-highlighting editor that supports direct code execution, as well as tools for plotting, history, debugging and workspace management. [RStudio Website - August 2016]

Available versions and module name

0.98.1103 (rstudio or rstudio-0.98.1103)

0.98.1098 (rstudio or rstudio-0.98.1098)

Default version available

0.98.1103

Official Website

https://www.rstudio.com/products/rstudio/

If, for whatever reason, you would like to use the older versions of the compilers, or other available software, you can simply "unload" the current module and load the older version. See Software Module Information webpage.

Software list

  • AmpliconNoise
  • ARB
  • BLAST (Legacy BLAST- Not BLAST+)
  • BLAST+
  • Bowtie2
  • CD-HIT
  • cdbtools
  • ChimeraSlayer
  • clearcut
  • Cufflinks
  • Cytoscape
  • FastQC
  • FastTree
  • Fastx-Toolkit
  • Gepard
  • HMMER
  • IGV
  • infernal
  • Kraken
  • metavelvet
  • mothur
  • MUSCLE
  • Ngopt
  • ParsInsert
  • Pear
  • Pplacer
  • QIIME
  • RAxML
  • rRNASelector
  • RSEM
  • RTAX
  • SAM Tools
  • SAMStat
  • SourceTracker
  • TopHat
  • Trimmomatic
  • Trinityrnaseq
  • UCLUST
  • UProC
  • USEARCH
  • Velvet
  • Velvet Optmiser
  • Glasgow Haskell Compiler
  • GNU Bison
  • GNU Compiler
  • GNU Fortran Compiler
  • Go Compiler
  • Intel C and C++ Compiler
  • Intel Fortran Compiler
  • Mono C# Compiler and associated libraries
  • Apache Maven
  • GNU Emacs
  • IntelliJ IDEA
  • RStudio
  • Tex Live
  • Tex Info
  • ANSYS (Fluent and Mechanical)
  • ABAQUS
  • AVL Fire
  • Comsol Multiphysics
  • GDAL
  • GEOS
  • Panoply
  • Circos
  • ImageJ
  • ImageMagick
  • PLPlot
  • Xfig
  • Perl
  • Python (with many Modules Installed)
  • Mathematica
  • Grid Mathematica
  • Matlab
  • Matlab-Simulink
  • Octave
  • OpenBUGS
  • R
  • SPSS (by IBM)
  • Java
  • APSIM
  • Boost C++ Libraries
  • Expat XML Parser
  • FFTW
  • GMP (GNU Multiple Precision Arithmetic Library)
  • GNU Scientific Library (GSL)
  • HDF5
  • HDF-EOS5
  • Intel Math Kernel Libraries (Intel® MKL)
  • libbz2
  • libcurl
  • libjpeg
  • libpng
  • MPI
  • OpenBLAS
  • PCRE (Perl Compatible Regular Expressions)
  • szip
  • tcl
  • tk
  • UDUNITS